Cannot upgrade to latest airbyte: Error starting Micronaut server in airbyte-cron

Connector Questions & Issues
1
  • Is this your first time deploying Airbyte?: No
  • OS Version / Instance: linux rhel 7
  • Memory / Disk: 8 Gb/30 Gb
  • Deployment: Are you using Docker or Kubernetes deployment? Kubernetes
  • Airbyte Version: What version are you using now? 0.39-36-alpha
  • Source name/version:
  • Destination name/version:
  • Step: The issue is happening during sync, creating the connection or a new source? When upgrading to the latest version
  • Description:
  • We are trying to upgrade Airbyte from 0.39-36-alpha to the latest version. Following the doc here to migrate from old charts to new charts: Deploy Airbyte on Kubernetes using Helm (Beta) | Airbyte Documentation
  • airbyte-bootloader spins up fine and in the logs able to see connect to the db
  • airbyte-cron fails with “Error starting Micronaut server: Bean definition [javax.sql.DataSource] could not be loaded: Error instantiating bean of type [javax.sql.DataSource]”
  • Full logs:
2022-12-30 19:26:34,566 main INFO Loading mask data from '/seed/specs_secrets_mask.yaml

    ___    _      __          __
   /   |  (_)____/ /_  __  __/ /____
  / /| | / / ___/ __ \/ / / / __/ _ \
 / ___ |/ / /  / /_/ / /_/ / /_/  __/
/_/  |_/_/_/  /_.___/\__, /\__/\___/
                    /____/
        : airbyte-cron :

  Micronaut (v3.7.4)

2022-12-30 19:26:35 INFO i.m.c.e.DefaultEnvironment(<init>):159 - Established active environments: [k8s, cloud, ec2, control-plane]
2022-12-30 19:26:36 INFO c.z.h.HikariDataSource(<init>):80 - HikariPool-1 - Starting...
2022-12-30 19:26:47 ERROR c.z.h.p.HikariPool(throwPoolInitializationException):594 - HikariPool-1 - Exception during pool initialization.
org.postgresql.util.PSQLException: The connection attempt failed.
        at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:331) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:247) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.makeConnection(Driver.java:434) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.connect(Driver.java:291) ~[postgresql-42.5.0.jar:42.5.0]
        at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:138) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:100) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:81) ~[HikariCP-5.0.1.jar:?]
        at io.micronaut.configuration.jdbc.hikari.HikariUrlDataSource.<init>(HikariUrlDataSource.java:35) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.DatasourceFactory.dataSource(DatasourceFactory.java:66) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.$DatasourceFactory$DataSource0$Definition.build(Unknown Source) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.context.BeanDefinitionDelegate.build(BeanDefinitionDelegate.java:161) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2354) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2305) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2251) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3016) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:80) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2918) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.loadContextScopeBean(DefaultBeanContext.java:2737) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1915) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultApplicationContext.initializeContext(DefaultApplicationContext.java:249) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.readAllBeanDefinitionClasses(DefaultBeanContext.java:3326) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.finalizeConfiguration(DefaultBeanContext.java:3684) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.start(DefaultBeanContext.java:341) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultApplicationContext.start(DefaultApplicationContext.java:194) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.runtime.Micronaut.start(Micronaut.java:75) ~[micronaut-context-3.7.4.jar:3.7.4]
        at io.airbyte.cron.MicronautCronRunner.main(MicronautCronRunner.java:22) ~[io.airbyte-airbyte-cron-0.40.26.jar:?]
Caused by: java.net.SocketTimeoutException: Connect timed out
        at sun.nio.ch.NioSocketImpl.timedFinishConnect(NioSocketImpl.java:539) ~[?:?]
        at sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:585) ~[?:?]
        at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) ~[?:?]
        at java.net.Socket.connect(Socket.java:666) ~[?:?]
        at org.postgresql.core.PGStream.createSocket(PGStream.java:241) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.PGStream.<init>(PGStream.java:98) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:109) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:235) ~[postgresql-42.5.0.jar:42.5.0]
        ... 30 more
2022-12-30 19:26:47 ERROR i.m.r.Micronaut(handleStartupException):338 - Error starting Micronaut server: Bean definition [javax.sql.DataSource] could not be loaded: Error instantiating bean of type  [javax.sql.DataSource]

Message: Failed to initialize pool: The connection attempt failed.
Path Taken: DataSource.dataSource(DatasourceConfiguration datasourceConfiguration)
io.micronaut.context.exceptions.BeanInstantiationException: Bean definition [javax.sql.DataSource] could not be loaded: Error instantiating bean of type  [javax.sql.DataSource]

Message: Failed to initialize pool: The connection attempt failed.
Path Taken: DataSource.dataSource(DatasourceConfiguration datasourceConfiguration)
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1921) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultApplicationContext.initializeContext(DefaultApplicationContext.java:249) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.readAllBeanDefinitionClasses(DefaultBeanContext.java:3326) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.finalizeConfiguration(DefaultBeanContext.java:3684) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.start(DefaultBeanContext.java:341) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultApplicationContext.start(DefaultApplicationContext.java:194) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.runtime.Micronaut.start(Micronaut.java:75) ~[micronaut-context-3.7.4.jar:3.7.4]
        at io.airbyte.cron.MicronautCronRunner.main(MicronautCronRunner.java:22) ~[io.airbyte-airbyte-cron-0.40.26.jar:?]
Caused by: io.micronaut.context.exceptions.BeanInstantiationException: Error instantiating bean of type  [javax.sql.DataSource]

Message: Failed to initialize pool: The connection attempt failed.
Path Taken: DataSource.dataSource(DatasourceConfiguration datasourceConfiguration)
        at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2367) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2305) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2251) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3016) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:80) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2918) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.loadContextScopeBean(DefaultBeanContext.java:2737) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1915) ~[micronaut-inject-3.7.4.jar:3.7.4]
        ... 7 more
Caused by: com.zaxxer.hikari.pool.HikariPool$PoolInitializationException: Failed to initialize pool: The connection attempt failed.
        at com.zaxxer.hikari.pool.HikariPool.throwPoolInitializationException(HikariPool.java:596) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:582) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:100) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:81) ~[HikariCP-5.0.1.jar:?]
        at io.micronaut.configuration.jdbc.hikari.HikariUrlDataSource.<init>(HikariUrlDataSource.java:35) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.DatasourceFactory.dataSource(DatasourceFactory.java:66) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.$DatasourceFactory$DataSource0$Definition.build(Unknown Source) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.context.BeanDefinitionDelegate.build(BeanDefinitionDelegate.java:161) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2354) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2305) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2251) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3016) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:80) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2918) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.loadContextScopeBean(DefaultBeanContext.java:2737) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1915) ~[micronaut-inject-3.7.4.jar:3.7.4]
        ... 7 more
Caused by: org.postgresql.util.PSQLException: The connection attempt failed.
        at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:331) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:247) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.makeConnection(Driver.java:434) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.connect(Driver.java:291) ~[postgresql-42.5.0.jar:42.5.0]
        at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:138) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:100) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:81) ~[HikariCP-5.0.1.jar:?]
        at io.micronaut.configuration.jdbc.hikari.HikariUrlDataSource.<init>(HikariUrlDataSource.java:35) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.DatasourceFactory.dataSource(DatasourceFactory.java:66) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.$DatasourceFactory$DataSource0$Definition.build(Unknown Source) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.context.BeanDefinitionDelegate.build(BeanDefinitionDelegate.java:161) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2354) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2305) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2251) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3016) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:80) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2918) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.loadContextScopeBean(DefaultBeanContext.java:2737) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1915) ~[micronaut-inject-3.7.4.jar:3.7.4]
        ... 7 more
Caused by: java.net.SocketTimeoutException: Connect timed out
        at sun.nio.ch.NioSocketImpl.timedFinishConnect(NioSocketImpl.java:539) ~[?:?]
        at sun.nio.ch.NioSocketImpl.connect(NioSocketImpl.java:585) ~[?:?]
        at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:327) ~[?:?]
        at java.net.Socket.connect(Socket.java:666) ~[?:?]
        at org.postgresql.core.PGStream.createSocket(PGStream.java:241) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.PGStream.<init>(PGStream.java:98) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.v3.ConnectionFactoryImpl.tryConnect(ConnectionFactoryImpl.java:109) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.v3.ConnectionFactoryImpl.openConnectionImpl(ConnectionFactoryImpl.java:235) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.core.ConnectionFactory.openConnection(ConnectionFactory.java:49) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.jdbc.PgConnection.<init>(PgConnection.java:247) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.makeConnection(Driver.java:434) ~[postgresql-42.5.0.jar:42.5.0]
        at org.postgresql.Driver.connect(Driver.java:291) ~[postgresql-42.5.0.jar:42.5.0]
        at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:138) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:359) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:201) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:470) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:561) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:100) ~[HikariCP-5.0.1.jar:?]
        at com.zaxxer.hikari.HikariDataSource.<init>(HikariDataSource.java:81) ~[HikariCP-5.0.1.jar:?]
        at io.micronaut.configuration.jdbc.hikari.HikariUrlDataSource.<init>(HikariUrlDataSource.java:35) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.DatasourceFactory.dataSource(DatasourceFactory.java:66) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.configuration.jdbc.hikari.$DatasourceFactory$DataSource0$Definition.build(Unknown Source) ~[micronaut-jdbc-hikari-4.7.2.jar:4.7.2]
        at io.micronaut.context.BeanDefinitionDelegate.build(BeanDefinitionDelegate.java:161) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.resolveByBeanFactory(DefaultBeanContext.java:2354) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2305) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.doCreateBean(DefaultBeanContext.java:2251) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.createRegistration(DefaultBeanContext.java:3016) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.SingletonScope.getOrCreate(SingletonScope.java:80) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.findOrCreateSingletonBeanRegistration(DefaultBeanContext.java:2918) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.loadContextScopeBean(DefaultBeanContext.java:2737) ~[micronaut-inject-3.7.4.jar:3.7.4]
        at io.micronaut.context.DefaultBeanContext.initializeContext(DefaultBeanContext.java:1915) ~[micronaut-inject-3.7.4.jar:3.7.4]
        ... 7 more
2

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